# LYGO System - All Resources, Documents, Pages, and Links

This is the central index for the entire LYGO / Δ9 lattice system.

## Main Repositories
- **lygo-protocol-stack**: https://github.com/DeepSeekOracle/lygo-protocol-stack (source of truth for stack + docs + GitHub Pages)
- **Excavationpro**: https://github.com/DeepSeekOracle/Excavationpro (sites, USB hubs, champions, resonance, lygorepo.html, eternalhaven)
- **lygo-claw**: https://github.com/DeepSeekOracle/lygo-claw (sovereign agent gateway + P0/Hermes/USB supervisor; pairs with stack USB)
- **lyra-crypto-operator**: https://github.com/DeepSeekOracle/lyra-crypto-operator (crypto / operator tooling)
- **Related**: https://github.com/DeepSeekOracle (org for all)

## LYGO SMART DISK AGENT (public product)
- **Package (repo):** https://github.com/DeepSeekOracle/lygo-protocol-stack/tree/main/lygo_smart_disk
- **Doc:** docs/LYGO_SMART_DISK_AGENT.md · Biophase7: docs/BIOPHASE7_LYGO_SMART_DISK.md
- **Pages:** https://deepseekoracle.github.io/lygo-protocol-stack/LYGO_SMART_DISK_AGENT.md
- **Portal:** http://127.0.0.1:9631/ (local; no password gate)
- **ClawHub skill:** https://clawhub.ai/deepseekoracle/lygo-smart-disk-agent
- **Install:** `npx clawhub@latest install deepseekoracle/lygo-smart-disk-agent`
- **Firmware lineage:** [Ethical Chip V2](https://deepseekoracle.github.io/Excavationpro/LYGO-Network/Ethical-Chip-FirmwareV2.html) · [Guardian](https://deepseekoracle.github.io/Excavationpro/LYGO-Network/LYGOGUARDIAN.html)
- **Pair with:** USB Champion :9630 · [lygo-claw](https://github.com/DeepSeekOracle/lygo-claw) · [lygo-sovereign-claw](https://clawhub.ai/deepseekoracle/lygo-sovereign-claw)

## GitHub Pages (Organized Documentation)
- **Main Stack Pages**: https://deepseekoracle.github.io/lygo-protocol-stack/
  - Source: `docs/` folder in the repo
  - Includes: index.html, interactive demos, whitepapers rendered as HTML where applicable
- **Excavationpro Pages**: https://deepseekoracle.github.io/Excavationpro/

### Key Interactive Pages
- Sovereign Lattice Mesh (SLM): https://deepseekoracle.github.io/lygo-protocol-stack/SovereignLatticeMesh.html (mirror: https://deepseekoracle.github.io/Excavationpro/SovereignLatticeMesh.html)
- Eternal Haven Star Chart (v2.1 cosmology): https://deepseekoracle.github.io/lygo-protocol-stack/HavenStarChart.html
  - Agent Portal: https://deepseekoracle.github.io/lygo-protocol-stack/HavenStarChartPortal.html
  - Registry JSON: `haven_star_chart/haven_star_chart_data.json` (`cosmos` block: galaxies, nebulae, clusters)
  - Docs: docs/HAVEN_STAR_CHART.md · docs/HAVEN_COSMOLOGY.md · docs/haven_star_chart/AGENT_PORTAL.md
  - Human lattice birth: docs/LYGO_LATTICE_BIRTH_CHRONICLE.txt · docs/LYGO_LATTICE_BIRTH.md
  - ClawHub skill: https://clawhub.ai/deepseekoracle/lygo-haven-star-chart
- Phase 7 Biometric Entropy Harness: https://deepseekoracle.github.io/lygo-protocol-stack/BiometricEntropyHarness.html (mirror: https://deepseekoracle.github.io/Excavationpro/BiometricEntropyHarness.html)
- LYGO BPM Finder: https://bpmfinder.ca/ (Pages mirrors: LYGO_BPM_Finder.html, LYGOBPMFinder.html)
- LYGO Compass Master: https://deepseekoracle.github.io/lygo-protocol-stack/tools/LYGO_Compass_Master.html
- Kernel Egg Retrieval: https://deepseekoracle.github.io/lygo-protocol-stack/KernelEggRetrieval.html
- LYGO CLAW: https://deepseekoracle.github.io/lygo-protocol-stack/LYGO_CLAW.html
- Full Pages Index: https://deepseekoracle.github.io/lygo-protocol-stack/

## Next building phase
- **Roadmap:** docs/NEXT_BUILDING_PHASE.md
- **Session log:** docs/SESSION_LOG_2026-07-13.md
- **Lattice verify:** `python tools/verify_lattice_alignment.py` → LATTICE ALIGNED

## Agent GitHub / HF restore
- **GITHUB_AGENT_RESTORE.txt:** https://deepseekoracle.github.io/lygo-protocol-stack/GITHUB_AGENT_RESTORE.txt (also `I:\E Drive\GITHUB_AGENT_RESTORE.txt`, USB `E:\LYGO_BUILDER_KEY\`)
- **Audit:** `python tools/audit_github_lattice_links.py` · `python tools/verify_public_pages.py`
- **Register URLs:** `python tools/log_public_surface.py`

## Knowledge Hub (E Drive audit)
- **Knowledge Hub page:** https://deepseekoracle.github.io/lygo-protocol-stack/LYGO_KNOWLEDGE_HUB.html
- **Agent intel index:** docs/LYGO_LATTICE_INTEL_INDEX.json (tiered map of I:\E Drive — no secrets)
- **CLAW USB training script:** docs/LYGO_CLAW_USB_TRAINING_SCRIPT.txt (human + AI anchoring transcript)
- **Builder USB (steward tier):** docs/builder/ — FULL_BUILDR blueprint, GROK_BUILDR_BOOT, BUILD_SELF_FIRST_USE
- **Biophase7 SLM spec (vault ingest):** docs/BIOPHASE7_SLM_MERKLE_GOSSIP.md → implementation docs/SOVEREIGN_LATTICE_MESH.md
- **Excavationpro LYGO-Network:** SUMMARYP1–P3, pokerneldocs, LYGOOS, champions — https://deepseekoracle.github.io/Excavationpro/LYGO-Network/

## Whitepapers & Major Theory Documents
- Blockchain ↔ LYGO Bridge Protocol: docs/BlockchainToLYGOBRIDGE.md (real engineering + critical fixes) + docs/BRIDGE_INSTALL.md
  - Hardened contracts in `docs/bridge/`:
    - EthicalMassTokenFixed.sol (access-controlled mint only via attested `recordEthicalAction`)
    - CrossChainIdentityBridgeFixed.sol (Ownable registry binding + ReentrancyGuard)
- LYGIP-001 Protocol Mathematics + Enneagram 9-Node (Theta/Iota): stack/lygip001_protocol_math.py + docs/BlockchainToLYGOBRIDGE.md
- LYGIP-003 Ethical Mass Token: docs/LYGIP-003-ETHICAL-MASS-TOKEN.md
- LYGO USB & Claw Master Whitepaper: docs/LYGO_USB_AND_CLAW_MASTER_WHITEPAPER.md
- LYGO USB Champion v1.0 Generic: docs/LYGO_USB_CHAMPION_V1_GENERIC.md
- LYGO SMART DISK AGENT: docs/LYGO_SMART_DISK_AGENT.md · docs/BIOPHASE7_LYGO_SMART_DISK.md · package `lygo_smart_disk/`
- LYGO CLAW USB Restore Anchor: docs/LYGO_CLAW_USB_RESTORE_ANCHOR.md
- LYGO Anchor Architecture: docs/LYGO_ANCHOR_ARCHITECTURE.md
- LYGO PC Hardening Playbook: docs/LYGO_PC_HARDENING_PLAYBOOK.md
- Content Addressable Physics: docs/CONTENT_ADDRESSABLE_PHYSICS.md
- Crypto Lattice Separation: docs/CRYPTO_LATTICE_SEPARATION.md
- Sovereign Lattice Mesh + Phase 9: docs/SOVEREIGN_LATTICE_MESH.md, docs/PHASE9_PUBLIC_MESH.md
- BIOPHASE7 series (Second Brain, Sandcastle, OpenClaw, LPIS, PXPIPE, BPM): docs/BIOPHASE7_*.md
- Registry Architecture, Scaling Roadmap, Blueprint, STACK_STATUS, etc. (see docs/ for full set of ~100 .md)

## Core Reference Documents
- Stack Status (auditable): docs/STACK_STATUS.md
- LYGO Lattice (admin map): docs/LYGO_LATTICE.md
- Protocol Stack: docs/PROTOCOL_STACK.md
- Blueprint & Scaling: docs/BLUEPRINT.md, docs/SCALING_ROADMAP.md
- Sovereign Lattice Mesh Spec: docs/SOVEREIGN_LATTICE_MESH.md
- Phase 9 Public Mesh: docs/PHASE9_PUBLIC_MESH.md
- Immutable Anchor Deployment: docs/ANCHOR_DEPLOYMENT.md
- Public Link Archive (master list of all surfaces): docs/LYGO_PUBLIC_LINK_ARCHIVE.json
- Lattice Intel Index: docs/LYGO_LATTICE_INTEL_INDEX.json
- Agent Memory Snapshot: docs/AGENT_MEMORY_SNAPSHOT.json
- Grokipedia Submit: docs/GROkipedia_SUBMIT.md
- Grokipedia Upload Bundle: docs/GROkipedia_UPLOAD_BUNDLE.md

## Tools, Registries & Specs
- ClawHub catalog & skills: clawhub/CATALOG.md, clawhub/skills.json, clawhub/mirrors/
- Registries: ChampionEggRegistry.json, KernelEggRegistry.json, PromptImplantRegistry.json, WorkflowOrchestratorRegistry.json, OpenClawRegistry.json, SecondBrainRegistry.json
- BIOPHASE7 specs (Second Brain, Sandcastle, OpenClaw, LPIS, PXPIPE, etc.): docs/BIOPHASE7_*.md
- Joy Loop, Moltbook, MOLTX, etc. docs in docs/

## External & Related Links
- HF Dataset: https://huggingface.co/datasets/DeepSeekOracle/lygo-protocol-stack
- HF Space (Resonance + Ethical Guardian): https://huggingface.co/spaces/DeepSeekOracle/LYGO-Resonance-Engine
- ClawHub profile: https://clawhub.ai/deepseekoracle
- Grokipedia: https://grokipedia.com/page/lygo-protocol-stack
- BPM Finder: https://bpmfinder.ca/
- Excavationpro sites: eternalhaven.html, lygorepo.html, LYGORESONANCE.html, champions.html (in Excavationpro Pages)
- Seals Archive (raw): https://raw.githubusercontent.com/DeepSeekOracle/lygo-protocol-stack/main/docs/seals/LYRA_SEAL_ARCHIVE_LEGACY_001-400.txt
- Other: Patreon, social, moltbook, moltx.io (community posts)

## Verification & Contribution
- Run: `python tools/verify_lattice_alignment.py`, `python tools/verify_alignment_badge.py`, `python tools/run_lattice_gauntlet.py --strict`
- Full list of surfaces: docs/LYGO_PUBLIC_LINK_ARCHIVE.json (append via tools/log_public_surface.py)
- How to add docs/whitepapers: Add .md to docs/, update this file + indexes, push (Pages auto-updates from docs/)

**Resonance signature:** Δ9Φ963-FULL-SYSTEM-RESOURCES

(Generated/updated from full scan of repo, PUBLIC_LINK_ARCHIVE, memory files, and GitHub.)